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A single-cell and single-nucleus RNA-Seq toolbox for fresh and frozen human tumors

Comprehensive analysis figures for each tumor sample analyzed as part of this study

bioRxiv preprint

HTAN Data Portal

Cancer Type Origin Age Patients Cells or Nuclei Sample ID Sample Type Protocols Tested
Non-small cell lung carcinoma (NSCLC)EpithelialAdult2CellsNSCLC14ResectionC4 / PDEC / LE
CellsNSCLC17ResectionPDEC / cd45n
Neuroblastoma (NB)NeuroendocrinePediatric4CellsHTAPP-312-SMP-901BiopsyC4
CellsHTAPP-312-SMP-902ResectionC4
CellsHTAPP-656-SMP-3481ResectionC4
CellsO-PDX1O-PDXPapain Kit
NucleiHTAPP-244-SMP-451ResectionEZ / CST / NST / TST
NucleiHTAPP-656-SMP-3481ResectionTST
NucleiO-PDX1O-PDXTST
Metastatic breast cancer (MBC)EpithelialAdult6CellsHTAPP-254-SMP-571ResectionLD
CellsHTAPP-735-SMP-3841BiopsyLD
CellsHTAPP-285-SMP-751BiopsyLD
CellsHTAPP-963-SMP-4741BiopsyLD
NucleiHTAPP-394-SMP-1561ResectionCST / NST
NucleiHTAPP-589-SMP-2851ResectionCST / TST
NucleiHTAPP-963-SMP-4741BiopsyCST / TST
GlioblastomaNeuronalAdult1CellsGBM125ResectionBTD Kit
High-grade gliomaNeuronalPediatricNucleiHTAPP-443-SMP-5491ResectionCST
Chronic Lymphocytc Leukemia (CLL)HematopoieticAdult1CellsCLL1Blood drawfresh
NucleiCLL1Blood drawTST
OvarianEpithelialAdult3CellsHTAPP-624-SMP-3212ResectionMHTD Kit
CellsHTAPP-727-SMP-3781AscitesMHTD Kit / cd45n
NucleiHTAPP-316-SMP-991ResectionCST / NST / TST
MelanomaMelanocytesAdult2NucleiMEL128ResectionTST
NucleiMEL112ResectionTST
SarcomaMesenchymalPediatric2NucleiHTAPP-951-SMP-4652ResectionCST / TST
NucleiHTAPP-975-SMP-4771ResectionTST